I have the code and need some modification using new technique.
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this project is about bioinformatics.. multiple sequence alignment.. need a way to find the conserve block of multiple sequence by utilize the pairwise alignment of them.
the step as as follows:
input is N sequence
make n(n-1)/n pairwise alignment 2 pair every time.
collect all the aligned pairs
extend them to construct a column.
from column build the all possible block or conserved blocks, or region.
use optimization method to find the best solution.
after doing sequential part also do the same project but in parallel way using MPI, openMP or Cuda GPU.
3 freelancere byder i gennemsnit $383 på dette job
Hi, I did similar task few months ago. I have experience with OpenMP and OpenMPI, so it depends on the environment where you will use it. See PM for more info.